Man pages for GenVisR
Genomic Visualizations in R

brcaMAFTruncated BRCA MAF file
Clinical-classClass Clinical
cnFreqConstruct copy-number frequency plot
cnSpecConstruct copy-number cohort plot
cnViewConstruct copy-number single sample plot
compIdentConstruct identity snp comparison plot
covBarsConstruct an overall coverage cohort plot
cytoGenoCytogenetic banding dataset
drawPlot-methodsMethod drawPlot
genCovConstruct a region of interest coverage plot
geneVizConstruct a gene-features plot
GenVisRGenVisR
getData-methodsMethod getData
getDescription-methodsMethod getDescription
getGrob-methodsMethod getGrob
getHeader-methodsMethod getHeader
getMeta-methodsMethod getMeta
getMutation-methodsMethod getMutation
getPath-methodsMethod getPath
getPosition-methodsMethod getPosition
getSample-methodsMethod getSample
getVersion-methodsMethod getVersion
GMS-classClass GMS
GMS_v4-classClass GMS_v4
GMS_Virtual-classClass GMS_Virtual
HCC1395_GermlineGermline Calls
HCC1395_NNormal BAM
HCC1395_TTumor BAM
hg19chrhg19 chromosome boundaries
ideoViewConstruct an ideogram
lohSpecPlot LOH data
lohViewConstruct LOH chromosome plot
lolliplotConstruct a lolliplot
lolliplot_AA2sidechainConvert AA to side chain classification
lolliplot_buildMainConstruct Lolliplot
Lolliplot-classClass Lolliplot
LucCNsegTruncated CN segments
MutationAnnotationFormat-classClass MutationAnnotationFormat
MutationAnnotationFormat_v1.0-classClass MutationAnnotationFormat_v1.0
MutationAnnotationFormat_v2.0-classClass MutationAnnotationFormat_v2.0
MutationAnnotationFormat_v2.1-classClass MutationAnnotationFormat_v2.1
MutationAnnotationFormat_v2.2-classClass MutationAnnotationFormat_v2.2
MutationAnnotationFormat_v2.3-classClass MutationAnnotationFormat_v2.3
MutationAnnotationFormat_v2.4-classClass MutationAnnotationFormat_v2.4
MutationAnnotationFormat_Virtual-classClass MutationAnnotationFormat_Virtual
MutSpectra-classClass MutSpectra
PIK3CASubset MAF file for PIK3CA gene
Rainfall-classClass Rainfall
SNPlociIdentity snps
TvTiConstruct transition-transversion plot
VEP-classClass VEP
VEP_v88-classClass VEP_v88
VEP_Virtual-classClass VEP_Virtual
waterfallConstruct a waterfall plot
Waterfall-classClass Waterfall
writeData-methodsMethod writeData
GenVisR documentation built on May 25, 2018, 6:01 p.m.