Files in GenVisR
Genomic Visualizations in R

DESCRIPTION
NEWS
LICENSE
NAMESPACE
data/HCC1395_Germline.rda
data/HCC1395_T.rda
data/brcaMAF.rda
data/HCC1395_N.rda
data/SNPloci.rda
data/cytoGeno.rda
data/LucCNseg.rda
data/hg19chr.rda
vignettes/waterfall_introduction.Rmd vignettes/GenVisR_intro.Rmd man/waterfall_qual.Rd man/geneViz_formatUTR.Rd man/lolliplot_dodgeCoordX.Rd man/genCov_qual.Rd man/lolliplot_dodgeCoordY.Rd man/compIdent_bamRcnt.Rd man/lohSpec_lohCalc.Rd man/waterfall_geneRecurCutoff.Rd man/lohSpec.Rd man/lohSpec_fileGlob.Rd man/genCov_assign_ggplotGrob_width.Rd man/waterfall_buildMutBurden_A.Rd man/waterfall_geneAlt.Rd man/waterfall_rmvSilent.Rd man/lohView_buildMain.Rd man/multi_cytobandRet.Rd man/HCC1395_N.Rd man/lolliplot.Rd man/lolliplot_Codon2AA.Rd man/lohSpec_stepCalc.Rd man/ideoView.Rd man/covBars.Rd man/geneViz_mapCoordSpace.Rd man/lohSpec_windowPosition.Rd man/genCov_alignPlot.Rd man/covBars_qual.Rd man/multi_selectOut.Rd man/lolliplot_buildMain.Rd man/compIdent_buildMain.Rd man/waterfall_buildMutBurden_B.Rd man/lolliplot_AA2sidechain.Rd man/geneViz_formatCDS.Rd man/ideoView_formatCytobands.Rd man/lohSpec_slidingWindow.Rd man/compIdent.Rd man/HCC1395_Germline.Rd man/genCov_extr_ggplotGrob_height.Rd man/waterfall_buildGenePrevelance.Rd man/waterfall.Rd man/GenVisR.Rd man/brcaMAF.Rd man/lohSpec_tilePosition.Rd man/covBars_buildMain.Rd man/lolliplot_reduceLolli.Rd man/waterfall_sampAlt.Rd man/waterfall_select_palette.Rd man/lohView_qual.Rd man/lolliplot_DNAconv.Rd man/waterfall_MGI2anno.Rd man/genCov_buildCov.Rd man/geneViz_mergeTypes.Rd man/ideoView_qual.Rd man/waterfall_palette_names.Rd man/lolliplot_qual.Rd man/genCov_assign_ggplotGrob_height.Rd man/lolliplot_constructGene.Rd man/waterfall_sampSort.Rd man/cytoGeno.Rd man/SNPloci.Rd man/cnView_qual.Rd man/waterfall_build_proportions.Rd man/lohSpec_buildMain.Rd man/multi_subsetChr.Rd man/lohSpec_tileWindow.Rd man/cnSpec.Rd man/lolliplot_transcriptID2codingSeq.Rd man/waterfall_hierarchyTRV.Rd man/genCov_trackViz.Rd man/waterfall_geneSort.Rd man/HCC1395_T.Rd man/waterfall_MAF2anno.Rd man/geneViz_buildGene.Rd man/geneViz_cdsFromTXID.Rd man/TvTi_buildMain.Rd man/genCov.Rd man/lolliplot_fetchDomain.Rd man/cnFreq_qual.Rd man/TvTi_calcTransTranvFreq.Rd man/compIdent_bamRcnt_qual.Rd man/LucCNseg.Rd man/cnSpec_buildMain.Rd man/compIdent_format.Rd man/ideoView_buildMain.Rd man/TvTi_rmIndel.Rd man/lohView.Rd man/genCov_buildTrack.Rd man/TvTi_annoTransTranv.Rd man/geneViz_mapCovCoordSpace.Rd man/multi_buildClin.Rd man/lohSpec_tileCalc.Rd man/TvTi.Rd man/waterfall_Custom2anno.Rd man/geneViz_Granges2dataframe.Rd man/waterfall_NA2gene.Rd man/TvTi_convMAF.Rd man/lolliplot_mutationObs.Rd man/waterfall_buildMain.Rd man/multi_align.Rd man/waterfall_calcMutFreq.Rd man/TvTi_alignPlot.Rd man/TvTi_rmMnuc.Rd man/TvTi_qual.Rd man/genCov_extr_ggplotGrob_width.Rd man/hg19chr.Rd man/geneViz_calcGC.Rd man/multi_chrBound.Rd man/geneViz_extrCDS.Rd man/cnSpec_qual.Rd man/waterfall_align.Rd man/geneViz_mergeTypeRegions.Rd man/geneViz.Rd man/geneViz_extrUTR.Rd man/lohSpec_qual.Rd man/cnView.Rd man/cnView_buildMain.Rd man/geneViz_mergeRegions.Rd man/cnFreq_buildMain.Rd man/cnFreq.Rd tests/testthat.R tests/testthat/test-ideoView_formatCytobands.R tests/testthat/test-TvTi_qual.R tests/testthat/test-waterfall_sampSort.R tests/testthat/test-waterfall_geneRecurCutoff.R tests/testthat/test-waterfall_MGI2anno.R tests/testthat/test-TvTi_rmIndel.R tests/testthat/test-lolliplot_dodgeCoordY.R tests/testthat/test-waterfall_sampAlt.R tests/testthat/test-waterfall_geneAlt.R tests/testthat/test-multi_chrBound.R tests/testthat/test-lolliplot_DNAconv.R tests/testthat/test-cnSpec_qual.R tests/testthat/test-lolliplot_mutationObs.R tests/testthat/test-waterfall_geneSort.R tests/testthat/test-TvTi.R tests/testthat/test_waterfall_hierarchyTRV.R tests/testthat/test-waterfall_calcMutFreq.R tests/testthat/test-multi_cytobandRet.R tests/testthat/test-lolliplot_dodgeCoordX.R tests/testthat/test-multi_subsetChr.R tests/testthat/test-waterfall_rmvSilent.R tests/testthat/test-lolliplot_qual.R tests/testthat/test-TvTi_convMaf.R tests/testthat/test-TvTi_rmMnuc.R tests/testthat/test-waterfall_qual.R tests/testthat/test-genCov_qual.R tests/testthat/test-waterfall.R tests/testthat/test-cnView_qual.R tests/testthat/test-cnSpec.R tests/testthat/test-waterfall_NA2gene.R tests/testthat/test-lolliplot_constructGene.R tests/testthat/test-waterfall_MAF2anno.R tests/testthat/test-TvTi_calcTransTranvFreq.R tests/testthat/test-lolliplot_reduceLolli.R tests/testthat/test-lolliplot_AA2sidechain.R tests/testthat/test-lolliplot_Codon2AA.R
build/vignette.rds
R/TvTi_convMaf.R R/waterfall_Custom2anno.R R/waterfall_palette_names.R R/compIdent_format.R R/waterfall_select_palette.R R/lohSpec_stepCalc.R R/geneViz_cdsFromTXID.R R/waterfall_sampAlt.R R/waterfall_geneAlt.R R/genCov_trackViz.R R/waterfall_MAF2anno.R R/geneViz_mergeTypeRegions.R R/lohView_qual.R R/genCov_extr_ggplotGrob_height.R R/geneViz_mapCovCoordSpace.R R/lolliplot_DNAconv.R R/compIdent_buildMain.R R/lohView.R R/lolliplot.R R/waterfall_buildMain.R R/lohSpec_lohCalc.R R/lohSpec_fileGlob.R R/genCov_buildTrack.R R/GenVisR.R R/multi_subsetChr.R R/geneViz_calcGC.R R/genCov_buildCov.R R/waterfall_buildMutBurden_B.R R/lolliplot_AA2sidechain.R R/lolliplot_Codon2AA.R R/cnFreq_qual.R R/multi_buildClin.R R/multi_cytobandRet.R R/lohSpec_tileCalc.R R/geneViz_Granges2dataframe.R R/lohView_buildMain.R R/lolliplot_buildMain.R R/ideoView_qual.R R/TvTi_buildMain.R R/multi_selectOut.R R/lolliplot_reduceLolli.R R/geneViz_mapCoordSpace.R R/waterfall.R R/genCov_qual.R R/geneViz_mergeTypes.R R/cnView_qual.R R/cnFreq_buildMain.R R/waterfall_build_proportions.R R/geneViz_formatcds.R R/TvTi_rmMnuc.R R/waterfall_qual.R R/geneViz_extrCDS.R R/cnView_buildMain.R R/lohSpec_tileWindow.R R/waterfall_buildMutBurden_A.R R/waterfall_align.R R/waterfall_buildGenePrevelance.R R/lohSpec_tilePosition.R R/lolliplot_qual.R R/cnView.R R/cnSpec.R R/compIdent.R R/genCov_alignPlot.R R/compIdent_bamRcnt.R R/waterfall_hierarchyTRV.R R/waterfall_NA2gene.R R/waterfall_rmvSilent.R R/lolliplot_transcriptID2codingSeq.R R/waterfall_geneSort.R R/covBars.R R/cnFreq_disjoin.R R/geneViz.R R/covBars_buildMain.R R/genCov_assign_ggplotGrob_height.R R/genCov_assign_ggplotGrob_width.R R/covBars_qual.R R/multi_chrBound.R R/cnSpec_qual.R R/TvTi_annoTransTranv.R R/cnFreq.R R/cnSpec_buildMain.R R/TvTi.R R/geneViz_formatUTR.R R/compIdent_bamRcnt_qual.R R/lohSpec_slidingWindow.R R/genCov.R R/TvTi_calcTransTranvFreq.R R/TvTi_alignPlot.R R/waterfall_calcMutFreq.R R/lolliplot_constructGene.R R/waterfall_sampSort.R R/ideoView_formatCytobands.R R/lolliplot_dodgeCoordX.R R/geneViz_extrUTR.R R/TvTi_rmIndel.R R/ideoView_buildMain.R R/lohSpec.R R/genCov_extr_ggplotGrob_width.R R/lohSpec_windowPosition.R R/waterfall_geneRecurCutoff.R R/ideoView.R R/lolliplot_dodgeCoordY.R R/waterfall_MGI2anno.R R/TvTi_qual.R R/lohSpec_buildMain.R R/lolliplot_mutationObs.R R/geneViz_mergeRegions.R R/lohSpec_qual.R R/geneViz_buildGene.R R/lolliplot_fetchDomain.R R/multi_align.R
inst/CITATION
inst/doc/waterfall_introduction.Rmd inst/doc/GenVisR_intro.Rmd inst/doc/waterfall_introduction.R inst/doc/GenVisR_intro.R
inst/doc/waterfall_introduction.html
inst/doc/GenVisR_intro.html
GenVisR documentation built on Nov. 17, 2017, 10:41 a.m.