topDOLITEGenes: Present top DOLITE enrichment test information with genes

In GeneAnswers: Integrated Interpretation of Genes

Description

Function to present top DOLITE enichmentInfo of given GeneAnswers instance with genes.

Usage

topDOLITEGenes(x, catTerm = TRUE, keepID=TRUE, geneSymbol = TRUE, ...)

Arguments

x	a given GeneAnswers instance with DOLITE test
catTerm	logic value to determine whether mapping DOLITE IDs to DOLITE terms
keepID	logic, to determine whether keep DOLITE IDs
geneSymbol	logic value to determine whether mapping gene Entrez IDs to gene symbols
...	other parameters to transfer to topCategoryGenes

Details

See function topCategoryGenes help for details

Value

print necessary information on the screen and save into a specified file if request.

Author(s)

Gang Feng, Pan Du and Simon Lin

References

Feng, G., Du, P., Krett, N., Tessel, M., Rosen, S., Kibbe, W.A. and Lin, S.M., 'A collection of bioconductor methods to visualize gene-list annotations', BMC Research Notes 2010, 3:10

See Also

topCategoryGenes

Examples

##x is a GeneAnswers instance with DOLITE test
## Not run: topDOLITEGenes(x, geneSymbol=TRUE, orderby='pvalue', top=10, topGenes='ALL', genesOrderBy='pValue', file=TRUE)

GeneAnswers documentation built on Nov. 8, 2020, 4:53 p.m.