topPATH: Present top KEGG enrichment test information

Description Usage Arguments Value Author(s) References See Also Examples

Description

Function to present top KEGG enichmentInfo of given GeneAnswers instance.

Usage

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topPATH(x, catTerm = TRUE, keepID = TRUE, ...)

Arguments

x

a given GeneAnswers instance containing KEGG information

catTerm

logic value to determine whether mapping to DOLite terms or not

keepID

logic value to determine whether showing IDs or not

...

other parameters to transfer to topCategory

Value

print necessary information on the screen and save into a specified file if request.

Author(s)

Gang Feng, Pan Du and Simon Lin

References

Feng, G., Du, P., Krett, N., Tessel, M., Rosen, S., Kibbe, W.A. and Lin, S.M., 'A collection of bioconductor methods to visualize gene-list annotations', BMC Research Notes 2010, 3:10

See Also

topCategory

Examples

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2
# x is a GeneAnswers instance with DOLite test
## Not run: topPATH(x, top=10)

GeneAnswers documentation built on May 2, 2018, 2:55 a.m.