topREACTOME.PATH: Present top REACTOME.PATH enrichment test information

In GeneAnswers: Integrated Interpretation of Genes

Description

Function to present top REACTOME.PATH enichmentInfo of given GeneAnswers instance.

Usage

topREACTOME.PATH(x, catTerm = TRUE, keepID=TRUE, ...)

Arguments

x	a given GeneAnswers instance containing REACTOME.PATH information
catTerm	logic value to determine whether mapping to REACTOME.PATH terms or not
keepID	logic value to determine whether showing REACTOME.PATH IDs or not
...	other parameters to transfer to topCategory

Value

print necessary information on the screen and save into a specified file if request.

Author(s)

Gang Feng, Pan Du and Simon Lin

References

Feng, G., Du, P., Krett, N., Tessel, M., Rosen, S., Kibbe, W.A. and Lin, S.M., 'A collection of bioconductor methods to visualize gene-list annotations', BMC Research Notes 2010, 3:10

See Also

topCategory

Examples

# x is a GeneAnswers instance with REACTOME.PATH test
## Not run: topREACTOME.PATH(x, top=10)

GeneAnswers documentation built on Nov. 8, 2020, 4:53 p.m.