topcaBIO.PATH: Present top CABIO.PATH enrichment test information

In GeneAnswers: Integrated Interpretation of Genes

Description

Function to present top CABIO.PATH enichmentInfo of given GeneAnswers instance. This function is not supported starting this version due to the termination of the caBig project.

Usage

topcaBIO.PATH(x, catTerm = TRUE, keepID=TRUE, ...)

Arguments

x	a given GeneAnswers instance containing CABIO.PATH information
catTerm	logic value to determine whether mapping to CABIO.PATH terms or not
keepID	logic value to determine whether showing CABIO.PATH IDs or not
...	other parameters to transfer to topCategory

Value

print necessary information on the screen and save into a specified file if request.

Author(s)

Gang Feng, Pan Du and Simon Lin

References

Feng, G., Du, P., Krett, N., Tessel, M., Rosen, S., Kibbe, W.A. and Lin, S.M., 'A collection of bioconductor methods to visualize gene-list annotations', BMC Research Notes 2010, 3:10

See Also

topCategory

Examples

# x is a GeneAnswers instance with CABIO.PATH test
## Not run: topcaBIO.PATH(x, top=10)

GeneAnswers documentation built on Nov. 8, 2020, 4:53 p.m.