getExperimentSet.CorrData: Get experiment set data frame for a given modality
In IdMappingAnalysis: ID Mapping Analysis

Description Usage Arguments Value Author(s) See Also Examples

Get experiment set data frame for a given modality.

1 2	## S3 method for class 'CorrData' getExperimentSet(this, modality, as=c("data.frame", "ExpressionSet"), IDs=NULL, verbose=FALSE, ...)

`modality`	Experiment modality for which data to be retrieved, i.e. 'Uniprot', 'Affy' etc.
`as`	`character` string defining in what format to the experiment data should be returned. The possible values are either 'data.frame' (default) or 'ExpressionSet'.
`IDs`	Optional character vector of ID subset for which data to be retrieved, or `NULL` (default) in which case data for all IDs returned.
`verbose`	if `TRUE` enables diagnostic messages. Default is `FALSE`.
`...`	Not used

Depending on 'as' argument, either EspressionSet or data.frame containing experiment data for a given modality.

Alex Lisovich, Roger Day

For more information see CorrData.

 #retrieve msms ('Uniprot') experiment data as a data frame
 expSetDF<-examples$corrData$getExperimentSet(modality="Uniprot",as="data.frame");
 expSetDF[1:10,1:5];

 #retrieve mrns ('Affy') experiment data as an ExpressionSet
 expSet<-examples$corrData$getExperimentSet(modality="Affy",as="ExpressionSet");
 print(expSet);
 expSetDF<-t(as(expSet,"data.frame"));
 expSetDF[1:10,1:5];