getStats.IdMapCounts: Retrieves a set of unique counts of secondary IDs

In IdMappingAnalysis: ID Mapping Analysis

Description

Retrieves a set of unique counts of secondary IDs over the all ID Maps and then computes the number of entries and percentage corresponding to each count for all ID Maps within the given object

Usage

## S3 method for class 'IdMapCounts'
getStats(this, percent=TRUE, digits=1, summary=FALSE, cutoff=3, verbose=FALSE, ...)

Arguments

idCounts	IdMapCounts object or a list of objects on which summary is computed
percent	logical indicating wherether the percentage column(s) should be included into summary
digits	integer indicating the number of decimal places in percentage column
summary	if TRUE, the summary of counts is generated. Default is FALSE.
cutoff	If summary is TRUE, all data for counts greater than cutoff are collapsed (summarized) into one row. Default is 3.
verbose	If TRUE enables diagnostic messages.Default is FALSE
...	Not used

Value

Data frame representing a set of unique counts of secondary IDs. if summary is FALSE, the resulting data frame represent the number of entries and percentage corresponding to each count for all ID Maps within the object. If summary is TRUE, the resulting data frame represent the formatted summary of count statistics, including summarized data for counts grater than cutoff, maximum number of secondary IDs per primary ID and the total number of secondary IDs for each DB within the IdMapCounts object.

Author(s)

Alex Lisovich, Roger Day

See Also

For more information see IdMapCounts.

Examples

 jointIdMap<-JointIdMap(examples$identDfList);
 cnts<-jointIdMap$getCounts(verbose=TRUE);
 cnts$getStats();
 cnts$getStats(summary=TRUE,cutoff=4);
 

IdMappingAnalysis documentation built on Oct. 31, 2019, 3:30 a.m.