plot.IdMapCounts: Compute and plot the (inversed) ecdf for each ID Map count...

In IdMappingAnalysis: ID Mapping Analysis

Description

Compute and plot the (inversed) ecdf for each ID Map count entry within the IdMapCounts object.

Usage

## S3 method for class 'IdMapCounts'
plot(x, idMapNames=NULL, complement=TRUE, log=TRUE, lineColors=NULL, pointSymbols=NULL, pointColors=NULL, cex.main=1.2, cex.lab=1, cex.axis=1, cex.legend=1, par.zoom=1, ...)

Arguments

idMapNames	optional subset of ID Map names within the counts object for which ecdf's should be plotted. If NULL (default), the ecdf's for all ID Maps within the object are plotted.
complement	logical indicating wherether the complementary ecdf should be plotted The default is TRUE
log	logical indicating if log scale should be used. The default is TRUE.
lineColors	Recyclable vector of line colors. If NULL (default), a set of predefined colors is used.
pointSymbols	Character or numeric recyclable vector of symbols used to plotting points. If NULL (default), a set of predefined symbols is used.
pointColors	Recyclable vector of point colors. If NULL (default), a set of predefined colors is used.
cex.main	Font size for plot main title. Default is 1.2.
cex.lab	Font size for X and Y axis titles. Default is 1.
cex.axis	Font sixe for axis labels. Default is 1.
cex.legend	Legend font size. Default is 1.
par.zoom	graphics parameters zoom factor. Scales the graphical parameters like cex, lwd, mai etc.
...	Additional graphical parameters

Author(s)

Alex Lisovich, Roger Day

See Also

For more information see IdMapCounts.

Examples

 jointIdMap<-JointIdMap(examples$identDfList);
 cnts<-jointIdMap$getCounts();
 cnts$plot();
 

IdMappingAnalysis documentation built on Oct. 31, 2019, 3:30 a.m.