Files in MSGFplus

An interface between R and MS-GF+

README.md R/msgfParLengthRange.R R/msgfPar-getters.R R/msgfParFragmentation.R R/msgfParChargeRange.R R/msgfParInstrument.R R/aaa.R R/msgfParTolerance.R R/msgfParNtt.R R/msgfParEnzyme.R R/msgfAsync.R R/generics.R R/msgfPar.R R/MSGFplus-package.R R/msgfParMatches.R R/msgfParTda.R R/msgfParModification.R R/zzz.R R/msgfParProtocol.R R/msgfParModificationList.R R/msgfParIsotopeError.R vignettes/Using_MSGFplus.Rmd man/msgfParNtt-class.Rd man/msgfParProtocol-class.Rd man/fragmentation.Rd man/msgfParInstrument-class.Rd man/msgfParFragmentation-class.Rd man/chargeRange.Rd man/msgfParChargeRange-class.Rd man/msgfPar-class.Rd man/isotopeError.Rd man/runMSGF.Rd man/msgfParModification-class.Rd man/msgfParIsotopeError-class.Rd man/msgfParTda-class.Rd man/MSGFplus-package.Rd man/msgfParModificationList-class.Rd man/msgfParFromID.Rd man/protocol.Rd man/msgfPar.Rd man/getMSGFpar.Rd man/enzyme.Rd man/msgfAsync-class.Rd man/msgfParEnzyme-class.Rd man/matches.Rd man/tda.Rd man/lengthRange.Rd man/msgfParTolerance-class.Rd man/instrument.Rd man/db.Rd man/msgfParLengthRange-class.Rd man/ntt.Rd man/msgfParMatches-class.Rd man/tolerance.Rd man/mods.Rd tests/test-all.R tests/testthat/test_msgfParNtt.R tests/testthat/test_msgfParTda.R tests/testthat/test_msgfParTolerance.R tests/testthat/test_msgfParIsotopeError.R tests/testthat/test_msgfParProtocol.R tests/testthat/test_getMSGFpar.R tests/testthat/test_msgfParLengthRange.R tests/testthat/test_msgfParModification.R tests/testthat/test_msgfParModificationList.R tests/testthat/test_msgfParEnzyme.R tests/testthat/test_setGet.R tests/testthat/test_msgfParMatches.R tests/testthat/test_msgfParFragmentation.R tests/testthat/test_msgfParInstrument.R tests/testthat/test_msgfParChargeRange.R inst/doc/Using_MSGFplus.Rmd inst/doc/Using_MSGFplus.R