isotopeError: Get and set isotope error in msgfPar objects

Description Usage Arguments Value Methods (by class) See Also Examples

Description

These functions allow you to retrieve and set the isotope error used when calculating the parent ion error range

Usage

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isotopeError(object)

isotopeError(object) <- value

## S4 method for signature 'msgfPar'
isotopeError(object)

## S4 replacement method for signature 'msgfPar,numeric'
isotopeError(object) <- value

## S4 replacement method for signature 'msgfPar,msgfParIsotopeError'
isotopeError(object) <- value

Arguments

object

An msgfPar object

value

Either an integer vector or an msgfParIsotopeError object

Value

In case of the getter an integer vector

Methods (by class)

See Also

Other msgfPar-getter_setter: chargeRange, db, enzyme, fragmentation, instrument, lengthRange, matches, mods, ntt, protocol, tda, tolerance

Examples

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parameters <- msgfPar(system.file(package='MSGFplus', 'extdata', 'milk-proteins.fasta'))
isotopeError(parameters) <- c(0, 3)
isotopeError(parameters)

MSGFplus documentation built on Nov. 17, 2017, 9:04 a.m.