msgfParMatches-class: A class handling number of matches

In MSGFplus: An interface between R and MS-GF+

Description

This class defines a number of matches and provides methods to get correct system call parameters.

Usage

## S4 method for signature 'msgfParMatches'
show(object)

## S4 method for signature 'msgfParMatches'
length(x)

## S4 method for signature 'msgfParMatches'
getMSGFpar(object)

msgfParMatches(value)

Arguments

object	An msgfParMatches object
x	An msgfParMatches object
value	An integer giving the number of matches that should be returned per spectrum

Value

For length() An integer.

For getMSGFpar() A string.

For msgfParMatches() An msgfParMatches object.

Methods (by generic)

• show: Short summary of msgfParMatches object

• length: Report the length of an msgfParMatches object

• getMSGFpar: Get system compliant function call

Slots

value

An integer giving the number of matches per spectrum reported by MS-GF+

See Also

Other msgfParClasses: msgfPar-class, msgfParChargeRange-class, msgfParEnzyme-class, msgfParFragmentation-class, msgfParInstrument-class, msgfParIsotopeError-class, msgfParLengthRange-class, msgfParModification-class, msgfParModificationList-class, msgfParNtt-class, msgfParProtocol-class, msgfParTda-class, msgfParTolerance-class, msgfPar

Examples

matches <- msgfParMatches(5)

MSGFplus documentation built on Nov. 8, 2020, 6:48 p.m.