msgfParMatches-class: A class handling number of matches

Description Usage Arguments Value Methods (by generic) Slots See Also Examples

Description

This class defines a number of matches and provides methods to get correct system call parameters.

Usage

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## S4 method for signature 'msgfParMatches'
show(object)

## S4 method for signature 'msgfParMatches'
length(x)

## S4 method for signature 'msgfParMatches'
getMSGFpar(object)

msgfParMatches(value)

Arguments

object

An msgfParMatches object

x

An msgfParMatches object

value

An integer giving the number of matches that should be returned per spectrum

Value

For length() An integer.

For getMSGFpar() A string.

For msgfParMatches() An msgfParMatches object.

Methods (by generic)

Slots

value

An integer giving the number of matches per spectrum reported by MS-GF+

See Also

Other msgfParClasses: msgfPar-class, msgfParChargeRange-class, msgfParEnzyme-class, msgfParFragmentation-class, msgfParInstrument-class, msgfParIsotopeError-class, msgfParLengthRange-class, msgfParModification-class, msgfParModificationList-class, msgfParNtt-class, msgfParProtocol-class, msgfParTda-class, msgfParTolerance-class, msgfPar

Examples

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MSGFplus documentation built on May 2, 2018, 2:42 a.m.