msgfParProtocol-class: A class handling protocol choice

Description Usage Arguments Value Methods (by generic) Slots See Also Examples

Description

This class defines a protocol and provides methods to get correct system call parameters.

Usage

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## S4 method for signature 'msgfParProtocol'
show(object)

## S4 method for signature 'msgfParProtocol'
length(x)

## S4 method for signature 'msgfParProtocol'
getMSGFpar(object)

msgfParProtocol(protocol)

Arguments

object

An msgfParProtocol object

x

An msgfParProtocol object

protocol

An integer or string specifying the protocol to use.

Value

For length() An integer.

For getMSGFpar() A string.

For msgfParProtocol() An msgfParProtocol object.

Methods (by generic)

Slots

protocol

An integer specifying a specific protocol type

See Also

Other msgfParClasses: msgfPar-class, msgfParChargeRange-class, msgfParEnzyme-class, msgfParFragmentation-class, msgfParInstrument-class, msgfParIsotopeError-class, msgfParLengthRange-class, msgfParMatches-class, msgfParModification-class, msgfParModificationList-class, msgfParNtt-class, msgfParTda-class, msgfParTolerance-class, msgfPar

Examples

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MSGFplus documentation built on Nov. 17, 2017, 9:04 a.m.