msgfParIsotopeError-class: A class handling isotope errors

In MSGFplus: An interface between R and MS-GF+

Description

This class defines a set of isotopes that should be included for error correction and provides methods to get correct system call parameters.

Usage

## S4 method for signature 'msgfParIsotopeError'
show(object)

## S4 method for signature 'msgfParIsotopeError'
length(x)

## S4 method for signature 'msgfParIsotopeError'
getMSGFpar(object)

msgfParIsotopeError(range)

Arguments

object	An msgfParIsotopeError object
x	An msgfParIsotopeError object
range	An integer vector with isotopes

Value

For length() An integer.

For getMSGFpar() A string.

For msgfParIsotopeError() An msgfParIsotopeError object.

Methods (by generic)

• show: Short summary of msgfParIsotopeError object

• length: Report the length of an msgfParIsotopeError object

• getMSGFpar: Get system compliant function call

Slots

range

An integer vector with lower and upper bounds of isotopes to error correct

See Also

Other msgfParClasses: msgfPar-class, msgfParChargeRange-class, msgfParEnzyme-class, msgfParFragmentation-class, msgfParInstrument-class, msgfParLengthRange-class, msgfParMatches-class, msgfParModification-class, msgfParModificationList-class, msgfParNtt-class, msgfParProtocol-class, msgfParTda-class, msgfParTolerance-class, msgfPar

Examples

isotopeError <- msgfParIsotopeError(c(0, 2))

MSGFplus documentation built on Nov. 8, 2020, 6:48 p.m.