getMSGFpar: Get a string representation of an msgfPar-related object
In MSGFplus: An interface between R and MS-GF+
Description
Usage
Arguments
Value
See Also
Examples
Description
The string representation is defined as the arguments that should get
appended to the call when running MSGF+ in the terminal/command prompt
Usage
1
getMSGFpar(object)
Arguments
object
An msgfPar object or a related object
Value
A string that can be appended to a system() call to specify
the parameters for the MSGF+ analysis
See Also
Examples
1
2
3
4
5
6
7
parameters <- msgfPar(
database=system.file(package='MSGFplus', 'extdata', 'milk-proteins.fasta'),
tolerance='20 ppm',
instrument='TOF',
enzyme='Lys-C'
)
getMSGFpar(parameters)
MSGFplus documentation built on Nov. 8, 2020, 6:48 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value See Also Examples
Description
The string representation is defined as the arguments that should get appended to the call when running MSGF+ in the terminal/command prompt
Usage
1 | getMSGFpar(object)
|
Arguments
object |
An msgfPar object or a related object |
Value
A string that can be appended to a system() call to specify
the parameters for the MSGF+ analysis
See Also
Examples
1 2 3 4 5 6 7 | parameters <- msgfPar(
database=system.file(package='MSGFplus', 'extdata', 'milk-proteins.fasta'),
tolerance='20 ppm',
instrument='TOF',
enzyme='Lys-C'
)
getMSGFpar(parameters)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.