msgfParTda-class: A class handling use of target-decoy approach for FDR...

Description Usage Arguments Value Methods (by generic) Slots See Also Examples

Description

This class defines whether to use target-decoy approach and provides methods to get correct system call parameters.

Usage

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## S4 method for signature 'msgfParTda'
show(object)

## S4 method for signature 'msgfParTda'
length(x)

## S4 method for signature 'msgfParTda'
getMSGFpar(object)

msgfParTda(value)

Arguments

object

An msgfParTda object

x

An msgfParTda object

value

A boolean defining whether to use tda or not

Value

For length() An integer.

For getMSGFpar() A string.

For msgfParTda() An msgfParTda object.

Methods (by generic)

Slots

tda

A boolean defining whether to use tda or not

See Also

Other msgfParClasses: msgfPar-class, msgfParChargeRange-class, msgfParEnzyme-class, msgfParFragmentation-class, msgfParInstrument-class, msgfParIsotopeError-class, msgfParLengthRange-class, msgfParMatches-class, msgfParModification-class, msgfParModificationList-class, msgfParNtt-class, msgfParProtocol-class, msgfParTolerance-class, msgfPar

Examples

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MSGFplus documentation built on May 2, 2018, 2:42 a.m.