msgfParInstrument-class: A class handling instrument types

In MSGFplus: An interface between R and MS-GF+

Description

This class defines an instrument type and provides methods to get correct system call parameters.

Usage

## S4 method for signature 'msgfParInstrument'
show(object)

## S4 method for signature 'msgfParInstrument'
length(x)

## S4 method for signature 'msgfParInstrument'
getMSGFpar(object)

msgfParInstrument(instrument)

Arguments

object	An msgfParInstrument object
x	An msgfParInstrument object
instrument	An integer specifying the instrument type

Value

For length() An integer.

For getMSGFpar() A string.

For msgfParInstrument() An msgfParInstrument object.

Methods (by generic)

• show: Short summary of msgfParInstrument object

• length: Report the length of an msgfParInstrument object

• getMSGFpar: Get system compliant function call

Slots

instrument

An integer specifying the instrument type

See Also

Other msgfParClasses: msgfPar-class, msgfParChargeRange-class, msgfParEnzyme-class, msgfParFragmentation-class, msgfParIsotopeError-class, msgfParLengthRange-class, msgfParMatches-class, msgfParModification-class, msgfParModificationList-class, msgfParNtt-class, msgfParProtocol-class, msgfParTda-class, msgfParTolerance-class, msgfPar

Examples

instrument <- msgfParInstrument(1)
instrument <- msgfParInstrument('HighRes')

MSGFplus documentation built on Nov. 8, 2020, 6:48 p.m.