msgfParEnzyme-class: A class handling enzyme selection

Description Usage Arguments Value Methods (by generic) Slots See Also Examples

Description

This class defines a digestion enzyme selection and provides methods to get correct system call parameters.

Usage

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## S4 method for signature 'msgfParEnzyme'
show(object)

## S4 method for signature 'msgfParEnzyme'
length(x)

## S4 method for signature 'msgfParEnzyme'
getMSGFpar(object)

msgfParEnzyme(enzyme)

Arguments

object

An msgfParEnzyme object

x

An msgfParEnzyme object

enzyme

Either an integer or a string

Value

For length() An integer.

For getMSGFpar() A string.

For msgfParEnzyme() An msgfParEnzyme object.

Methods (by generic)

Slots

enzyme

An integer specifiying the selection of enzyme. See the detail section of msgfPar

See Also

Other msgfParClasses: msgfPar-class, msgfParChargeRange-class, msgfParFragmentation-class, msgfParInstrument-class, msgfParIsotopeError-class, msgfParLengthRange-class, msgfParMatches-class, msgfParModification-class, msgfParModificationList-class, msgfParNtt-class, msgfParProtocol-class, msgfParTda-class, msgfParTolerance-class, msgfPar

Examples

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MSGFplus documentation built on Nov. 17, 2017, 9:04 a.m.