msgfParEnzyme-class: A class handling enzyme selection

In MSGFplus: An interface between R and MS-GF+

Description

This class defines a digestion enzyme selection and provides methods to get correct system call parameters.

Usage

## S4 method for signature 'msgfParEnzyme'
show(object)

## S4 method for signature 'msgfParEnzyme'
length(x)

## S4 method for signature 'msgfParEnzyme'
getMSGFpar(object)

msgfParEnzyme(enzyme)

Arguments

object	An msgfParEnzyme object
x	An msgfParEnzyme object
enzyme	Either an integer or a string

Value

For length() An integer.

For getMSGFpar() A string.

For msgfParEnzyme() An msgfParEnzyme object.

Methods (by generic)

• show: Short summary of msgfParEnzyme object

• length: Report the length of an msgfParEnzyme object

• getMSGFpar: Get system compliant function call

Slots

enzyme

An integer specifiying the selection of enzyme. See the detail section of msgfPar

See Also

Other msgfParClasses: msgfPar-class, msgfParChargeRange-class, msgfParFragmentation-class, msgfParInstrument-class, msgfParIsotopeError-class, msgfParLengthRange-class, msgfParMatches-class, msgfParModification-class, msgfParModificationList-class, msgfParNtt-class, msgfParProtocol-class, msgfParTda-class, msgfParTolerance-class, msgfPar

Examples

enzyme <- msgfParEnzyme(1)
enzyme <- msgfParEnzyme('Trypsin')

MSGFplus documentation built on Nov. 8, 2020, 6:48 p.m.