msgfParChargeRange-class: A class handling charge ranges

In MSGFplus: An interface between R and MS-GF+

Description

This class defines a charge range and provides methods to get correct system call parameters.

Usage

## S4 method for signature 'msgfParChargeRange'
show(object)

## S4 method for signature 'msgfParChargeRange'
length(x)

## S4 method for signature 'msgfParChargeRange'
getMSGFpar(object)

msgfParChargeRange(value)

Arguments

object	An msgfParChargeRange object
x	An msgfParChargeRange object
value	A numeric vector of length 2. The first element must be smaller than the last

Value

For length() An integer.

For getMSGFpar() A string.

For msgfParChargeRange() An msgfParChargeRange object.

Methods (by generic)

• show: Short summary of msgfParChargeRange object

• length: Report the length of an msgfParChargeRange object

• getMSGFpar: Get system compliant function call

Slots

value

A numeric vector of length 2 describing the upper and lower bounds of the charge range

See Also

Other msgfParClasses: msgfPar-class, msgfParEnzyme-class, msgfParFragmentation-class, msgfParInstrument-class, msgfParIsotopeError-class, msgfParLengthRange-class, msgfParMatches-class, msgfParModification-class, msgfParModificationList-class, msgfParNtt-class, msgfParProtocol-class, msgfParTda-class, msgfParTolerance-class, msgfPar

Examples

charges <- msgfParChargeRange(c(2, 5))

MSGFplus documentation built on Nov. 8, 2020, 6:48 p.m.