Man pages for MSGFplus
An interface between R and MS-GF+
| chargeRange | Get and set the charge range in msgfPar objects |
| db | Get and set database in msgfPar objects |
| enzyme | Get and set enzyme in msgfPar objects |
| fragmentation | Get and set fragmentation in msgfPar objects |
| getMSGFpar | Get a string representation of an msgfPar-related object |
| instrument | Get and set instrument in msgfPar objects |
| isotopeError | Get and set isotope error in msgfPar objects |
| lengthRange | Get and set peptide length range in msgfPar objects |
| matches | Get and set the number of matches in msgfPar objects |
| mods | Get and set the modifications in msgfPar objects |
| msgfAsync-class | A class referencing an asynchronous execution of MS-GF+ |
| msgfPar | Constructor for the msgfPar class |
| msgfParChargeRange-class | A class handling charge ranges |
| msgfPar-class | A class to contain parameters used in an MS-GF+ analysis |
| msgfParEnzyme-class | A class handling enzyme selection |
| msgfParFragmentation-class | A class handling Fragmentation types |
| msgfParFromID | Extract parameters from mzIdentML result file |
| msgfParInstrument-class | A class handling instrument types |
| msgfParIsotopeError-class | A class handling isotope errors |
| msgfParLengthRange-class | A class handling length ranges |
| msgfParMatches-class | A class handling number of matches |
| msgfParModification-class | A class handling modification characteristics |
| msgfParModificationList-class | A class handling a list of modifications |
| msgfParNtt-class | A class handling cleavage specificity |
| msgfParProtocol-class | A class handling protocol choice |
| msgfParTda-class | A class handling use of target-decoy approach for FDR... |
| msgfParTolerance-class | A class handling parent ion tolerance |
| MSGFplus-package | An interface between R and MS-GF+ |
| ntt | Get and set cleavage specificity in msgfPar objects |
| protocol | Get and set protocol in msgfPar objects |
| runMSGF | Runs MS-GF+ based on the given msgfPar object |
| tda | Get and set use of target-decoy approach in msgfPar objects |
| tolerance | Get and set the parent tolerance in msgfPar objects |
