DTEG.plot: Plot DTEG result

In ORFik: Open Reading Frames in Genomics

Description

Plot DTEG result

Usage

DTEG.plot(
  dt,
  output.dir = NULL,
  p.value = 0.05,
  plot.title = "",
  width = 6,
  height = 6,
  dot.size = 0.4,
  xlim = c(-5, 5),
  ylim = c(-10, 10),
  relative.name = "DTEG_plot.png"
)

Arguments

dt	a data.table with the results from DTEG.analysis
output.dir	a character path, default NULL(no save), or a directory to save to a file will be called "DTEG_plot.png"
p.value	a numeric, default 0.05 in interval (0,1) or "" to not show. What p-value used for the analysis? Will be shown as a caption.
plot.title	title for plots, usually name of experiment etc
width	numeric, default 6 (in inches)
height	numeric, default 6 (in inches)
dot.size	numeric, default 0.4, size of point dots in plot.
xlim	numeric vector, default c(-5, 5)
ylim	numeric vector, default c(-10, 10)
relative.name	character, Default: "DTEG_plot.png". Relative name of file to be saved in folder specified in output.dir. Change to .pdf if you want pdf file instead of png.

Value

a ggplot object

See Also

Other TE: DTEG.analysis(), te.table(), te_rna.plot()

Examples

#df.rfp <- read.experiment("Riboseq")
#df.rna <- read.experiment("RNAseq")
#dt <- DTEG.analysis(df.rfp, df.rna)
#DTEG.plot(dt, xlim = c(-2, 2), ylim = c(-2, 2))

ORFik documentation built on March 27, 2021, 6 p.m.