experiment.colors: Decide color for libraries by grouping

In ORFik: Open Reading Frames in Genomics

Description

Pick the grouping wanted for colors, by default only group by libtype. Like RNA-seq(skyblue4) and Ribo-seq(orange).

Usage

experiment.colors(
  df,
  color_list = "default",
  skip.libtype = FALSE,
  skip.stage = TRUE,
  skip.replicate = TRUE,
  skip.fraction = TRUE,
  skip.condition = TRUE
)

Arguments

df	an ORFik experiment
color_list	a character vector of colors, default "default". That is the vector c("skyblue4", 'orange', "green", "red", "gray", "yellow", "blue", "red2", "orange3"). Picks number of colors needed to make groupings have unique color
skip.libtype	a logical (FALSE), don't include libtype
skip.stage	a logical (FALSE), don't include stage in variable name.
skip.replicate	a logical (FALSE), don't include replicate in variable name.
skip.fraction	a logical (FALSE), don't include fraction
skip.condition	a logical (FALSE), don't include condition in variable name.

Value

a character vector of colors

ORFik documentation built on March 27, 2021, 6 p.m.