find_url_ebi: Locates and check if fastq files exists in ebi

In ORFik: Open Reading Frames in Genomics

Description

Look for files in ebi following url: ftp://ftp.sra.ebi.ac.uk/vol1/fastq Paired end and single end fastq files

Usage

find_url_ebi(SRR, stop.on.error = FALSE)

Arguments

SRR	character, SRR, ERR or DRR numbers.
stop.on.error	logical FALSE, if true will stop if all files are not found.

Value

full url to fastq files, same length as input (2 urls for paired end data). Returns empty character() if all files not found.

ORFik documentation built on March 27, 2021, 6 p.m.