Internal GAlignmentPairs loader from fst data.frame
a data.frame with columns minimum 6 columns:
seqnames, start1/start2 (integers), cigar1/cigar2 and strand
numeric, default 0. Only used for paired end bam files. One of (0: strand = *, 1: first read of pair is +, 2: first read of pair is -). See ?strandMode. Note: Sets default to 0 instead of 1, as readGAlignmentPairs uses 1. This is to guarantee hits, but will also make mismatches of overlapping transcripts in opposite directions.
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