install.sratoolkit: Download sra toolkit
In ORFik: Open Reading Frames in Genomics
Description
Usage
Arguments
Value
References
See Also
Examples
Description
Currently supported for Linux (64 bit centos and ubunutu is tested to work)
and Mac-OS(64 bit)
Usage
1
install.sratoolkit(folder = "~/bin", version = "2.10.9")
Arguments
folder
default folder, "~/bin"
version
a string, default "2.10.9"
Value
path to fastq-dump in sratoolkit
References
https://ncbi.github.io/sra-tools/fastq-dump.html
See Also
Other sra:
download.SRA.metadata(),
download.SRA(),
download.ebi(),
rename.SRA.files()
Examples
1
2
3
4
# install.sratoolkit()
## Custom folder and version
folder <- "/I/WANT/IT/HERE/"
# install.sratoolkit(folder, version = "2.10.7")
ORFik documentation built on March 27, 2021, 6 p.m.
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Description Usage Arguments Value References See Also Examples
Description
Currently supported for Linux (64 bit centos and ubunutu is tested to work) and Mac-OS(64 bit)
Usage
1 | install.sratoolkit(folder = "~/bin", version = "2.10.9")
|
Arguments
folder |
default folder, "~/bin" |
version |
a string, default "2.10.9" |
Value
path to fastq-dump in sratoolkit
References
https://ncbi.github.io/sra-tools/fastq-dump.html
See Also
Other sra:
download.SRA.metadata(),
download.SRA(),
download.ebi(),
rename.SRA.files()
Examples
1 2 3 4 | # install.sratoolkit()
## Custom folder and version
folder <- "/I/WANT/IT/HERE/"
# install.sratoolkit(folder, version = "2.10.7")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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