Man pages for OmaDB
R wrapper for the OMA REST API
| annotateSequence | Map GO annotation to a sequence that is not available in the... |
| cash-.omadb_obj | Resolve URLs automatically when accessed |
| formatTopGO | Format the GO annotations data |
| getAnnotation-deprecated | Get GO annotation for a sequence Function |
| getAttribute | Get the value for the Object Attribute |
| getData-deprecated | Get the Data Function |
| getGenome | Retrieve a genome from the OMA Browser database |
| getGenomeAlignment-deprecated | Get Whole Genome Alignment Function |
| getGenomePairs | Retrieves the pairwise relations among two genomes |
| getHOG | Retrieve a HOG from the OMA Browser |
| getLocus | Get loci for a given list of proteins |
| getObjectAttributes | Get the Object Attributes |
| getOMAGroup | Retrieve an OMA Group from the OMA Browser |
| getProtein | Retrieve a protein from the OMA Browser |
| getTaxonomy | Get the Taxonomic tree function |
| getTopGO | Get the topGO Object function |
| getTree | Get the Tree Object |
| getVersion | Get the API and database version function |
| getXref-deprecated | Get the CrossReferences in the OMA database for a pattern |
| group | An example OMA group object. |
| hog | An example HOG object. |
| mapSequence | Map the Protein Sequence Function |
| OmaDB-deprecated | Deprecated functions in package 'OmaDB'. |
| OmaDB-package | OmaDB: A package for the orthology prediction data download... |
| orthologs | An example orthologs object. |
| pairs | An example genome alignment object. |
| protein | An example protein object. |
| resolveURL | Load data for a given url from the OMA Browser API. |
| searchProtein | Get the CrossReferences in the OMA database for a pattern |
| sequence_annotation | An example dataframe containing GO annotations identified... |
| sequence_map | An example dataframe containing proteins identified from a... |
| setAPI | Set the url to the OMA Browser API |
| taxonomy | An example newick format taxonomy object. |
| xref | An example xref object. |
