Man pages for OmaDB
R wrapper for the OMA REST API

annotateSequenceMap GO annotation to a sequence that is not available in the...
cash-.omadb_objResolve URLs automatically when accessed
formatTopGOFormat the GO annotations data
getAnnotation-deprecatedGet GO annotation for a sequence Function
getAttributeGet the value for the Object Attribute
getData-deprecatedGet the Data Function
getGenomeRetrieve a genome from the OMA Browser database
getGenomeAlignment-deprecatedGet Whole Genome Alignment Function
getGenomePairsRetrieves the pairwise relations among two genomes
getHOGRetrieve a HOG from the OMA Browser
getLocusGet loci for a given list of proteins
getObjectAttributesGet the Object Attributes
getOMAGroupRetrieve an OMA Group from the OMA Browser
getProteinRetrieve a protein from the OMA Browser
getTaxonomyGet the Taxonomic tree function
getTopGOGet the topGO Object function
getTreeGet the Tree Object
getVersionGet the API and database version function
getXref-deprecatedGet the CrossReferences in the OMA database for a pattern
groupAn example OMA group object.
hogAn example HOG object.
mapSequenceMap the Protein Sequence Function
OmaDB-deprecatedDeprecated functions in package 'OmaDB'.
OmaDB-packageOmaDB: A package for the orthology prediction data download...
orthologsAn example orthologs object.
pairsAn example genome alignment object.
proteinAn example protein object.
resolveURLLoad data for a given url from the OMA Browser API.
searchProteinGet the CrossReferences in the OMA database for a pattern
sequence_annotationAn example dataframe containing GO annotations identified...
sequence_mapAn example dataframe containing proteins identified from a...
setAPISet the url to the OMA Browser API
taxonomyAn example newick format taxonomy object.
xrefAn example xref object.
OmaDB documentation built on Nov. 13, 2020, 2 a.m.