sequence_map: An example dataframe containing proteins identified from a...
In OmaDB: R wrapper for the OMA REST API

Description Usage Format Source

An example dataframe containing proteins identified from a given sequence.

1	sequence_map

A dataframe with 3 variables:

query: sequence that was queried
identified_by: type of identification
targets: list of protein targets identified

...

https://omabrowser.org/api/sequences/?query=MNDPSLLGYPNVGPQQQQQQQQQQHAGLLGKGTPNALQQQLHMNQLTGIPPPGLMNNSDVHTSSNNNSRQLLDQLANGNANMLNMNMDNNNNNNNNNNNNNNNGGGSGVMMNASTAAVNSIGMVPTVGTPVNINVNASNPLLHPHLDDPSLLNNPIWKLQLHLAAVSAQSLGQPNIYARQNAMKKYLATQQAQQAQQQAQQQAQQQVPGPFGPGPQAAPPALQPTDFQQSHIAEASKSLVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVSTPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER

OmaDB documentation built on Nov. 13, 2020, 2 a.m.

OmaDB index

Package overview README.md Exploring Hierarchical orthologous groups with OmaDB Exploring Taxonomic trees with OmaDB Get started with OmaDB Sequence Analysis with OmaDB

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