protein: An example protein object.

In OmaDB: R wrapper for the OMA REST API

Description

An object containing information for the YEAST00058 protein.

Usage

protein

Format

A S3 object with 23 variables:

entry_nr

entry number of the protein

entry_url

url pointer to the protein

omaid

oma identifier of the protein

canonicalid

canonicalid of the protein

sequence_md5

sequence_md5 of the protein

oma_group

oma_group of the protein

oma_hog_id

hog id of the protein

chromosome

chromosomal location of the protein

locus

GRanges object with the locus information for the protein

is_main_isoform

true/false

roothog_id

root taxonomic level of the relevant hog

roothog_id

taxonomic levels of the hog in which the protein is present

sequence_length

length of the protein sequence

sequence

AAString of the protein sequence

cdna

DNAString of the protein sequence

domains

url pointer to the list of protein domains

xref

url pointer to the list of protein cross references

orthologs

url pointer to the list of protein orthologs

homeologs

url pointer to the list of protein homeologs

gene_ontology

url pointer to the list of protein GO ontologies

oma_group_url

url pointer to the protein oma group

oma_hog_members

url pointer to the protein hog members

alternative_isoforms_urls

list of url pointers to the protein isoforms

...

Source

https://omabrowser.org/api/protein/6633022/

OmaDB documentation built on Nov. 13, 2020, 2 a.m.