pairs: An example genome alignment object.
In OmaDB: R wrapper for the OMA REST API

Description Usage Format Source

A dataframe containing information for the whole genome aligment of YEAST and ASHGO.

pairs

A dataframe object with 12 variables for each member of the pair, as well some 3 additional variables:

entry_nr: entry number of the ortholog
omaid: oma identifier of the ortholog
canonicalid: canonicalid of the ortholog
sequence_md5: sequence_md5 of the ortholog
oma_group: oma_group of the ortholog
oma_hog_id: hog id of the ortholog
chromosome: chromosomal location of the ortholog
locus.start: start locus of the ortholog
locus.end: end locus of the ortholog
locus.strand: locus strand of the ortholog
is_main_isoform: true/false
rel_type: relationship type of the ortholog to the gene
distance: ortholog distance
score: ortholog score

...

https://omabrowser.org/api/pairs/YEAST/ASHGO/

OmaDB documentation built on Nov. 13, 2020, 2 a.m.

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Package overview README.md Exploring Hierarchical orthologous groups with OmaDB Exploring Taxonomic trees with OmaDB Get started with OmaDB Sequence Analysis with OmaDB

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