formatTopGO: Format the GO annotations data
In OmaDB: R wrapper for the OMA REST API
Description
Usage
Arguments
Value
Examples
Description
The function to create a list of GO annotations that is compatible with topGO from protein objects in roma
Usage
1
formatTopGO(geneList, format)
Arguments
geneList
the list of OmaDB protein objects or a dataframe of ontologies to be included in the analysis - this is where the GO annotations are extracted from.
format
format for the data to be returned in - either 'GO2geneID' or 'geneID2GO'
Value
a list containing the GO2geneID or geneID2GO information
Examples
1
2
geneList = list(getProtein(id='YEAST01'),getProtein(id='YEAST03'))
annotations = formatTopGO(geneList,format='geneID2GO')
OmaDB documentation built on Nov. 13, 2020, 2 a.m.
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Description Usage Arguments Value Examples
Description
The function to create a list of GO annotations that is compatible with topGO from protein objects in roma
Usage
1 | formatTopGO(geneList, format)
|
Arguments
geneList |
the list of OmaDB protein objects or a dataframe of ontologies to be included in the analysis - this is where the GO annotations are extracted from. |
format |
format for the data to be returned in - either 'GO2geneID' or 'geneID2GO' |
Value
a list containing the GO2geneID or geneID2GO information
Examples
1 2 | geneList = list(getProtein(id='YEAST01'),getProtein(id='YEAST03'))
annotations = formatTopGO(geneList,format='geneID2GO')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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