OmaDB-deprecated: Deprecated functions in package 'OmaDB'.
In OmaDB: R wrapper for the OMA REST API
Description
Usage
Details
getXref
getAnnotation
getGenomeAlignment
getData
Description
These functions are provided for compatibility with
older versions of OmaDB only, and will be defunct at the
next release.
Usage
1
2
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5
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8
getXref(pattern)
getAnnotation(query)
getGenomeAlignment(genome1, genome2, chr1 = NULL, chr2 = NULL,
rel_type = NULL)
getData(type, id, attribute = NULL)
Details
The following functions are deprecated and will be
made defunct; use the replacement indicated below:
getXref
For getXref, use searchProtein.
getAnnotation
For getAnnotation, use annotateSequence.
getGenomeAlignment
For getGenomeAlignment, use getGenomePairs.
getData
For getData, use getProtein, getGenome, getOMAGroup.
OmaDB documentation built on Nov. 13, 2020, 2 a.m.
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Description Usage Details getXref getAnnotation getGenomeAlignment getData
Description
These functions are provided for compatibility with older versions of OmaDB only, and will be defunct at the next release.
Usage
1 2 3 4 5 6 7 8 | getXref(pattern)
getAnnotation(query)
getGenomeAlignment(genome1, genome2, chr1 = NULL, chr2 = NULL,
rel_type = NULL)
getData(type, id, attribute = NULL)
|
Details
The following functions are deprecated and will be made defunct; use the replacement indicated below:
getXref
For getXref, use searchProtein.
getAnnotation
For getAnnotation, use annotateSequence.
getGenomeAlignment
For getGenomeAlignment, use getGenomePairs.
getData
For getData, use getProtein, getGenome, getOMAGroup.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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