API for PathoStat
PathoStat Statistical Microbiome Analysis Package
| Global functions | |
|---|---|
| Bootstrap_LOOCV_LR_AUC | Man page Source code |
| Chisq_Test_Pam | Man page Source code |
| Fisher_Test_Pam | Man page Source code |
| GET_PAM | Man page Source code |
| LOOAUC_simple_multiple_noplot_one_df | Man page Source code |
| LOOAUC_simple_multiple_one_df | Man page Source code |
| PathoStat-class | Man page |
| TranslateIdToTaxLevel | Man page Source code |
| Wilcox_Test_df | Man page Source code |
| findRAfromCount | Man page Source code |
| findSelectedTaxonId | Source code |
| findTaxonLevels | Source code |
| findTaxonMat | Man page Source code |
| findTaxonomy | Man page Source code |
| findTaxonomy300 | Man page Source code |
| formatTaxTable | Man page Source code |
| getShinyInput | Man page Source code |
| getShinyInputCombat | Man page Source code |
| getShinyInputOrig | Man page Source code |
| getSignatureFromMultipleGlmnet | Man page Source code |
| grepTid | Man page Source code |
| loadPathoscopeReports | Man page Source code |
| loadPstat | Man page Source code |
| log2CPM | Man page Source code |
| pathostat1 | Man page |
| percent | Man page Source code |
| phyloseq_to_edgeR | Man page Source code |
| plotPCAPlotly | Man page Source code |
| plotPCoAPlotly | Man page Source code |
| prop_hash | Source code |
| proportion | Source code |
| proportionc | Source code |
| pstat | Man page |
| pstat_data | Man page |
| readPathoscopeData | Man page Source code |
| runPathoStat | Man page Source code |
| savePstat | Man page Source code |
| setShinyInput | Man page Source code |
| setShinyInputCombat | Man page Source code |
| setShinyInputOrig | Man page Source code |
| summarizeTable | Man page Source code |
| taxon_hash_update | Source code |
