profileWithTaxonomy: An example of a raw long input file together with the...

In PhyloProfile: PhyloProfile

Description

An example of a raw long input file together with the taxonomy info.

Usage

data(profileWithTaxonomy)

Format

A data frame with 20 rows and 12 variables:

• geneID Seed or ortholog group ID, e.g. "OG_1017"

• ncbiID Taxon ID, e.g. "ncbi176299"

• orthoID Ortholog ID, e.g. "A.fabrum@176299@1582"

• var1 First additional variable

• var2 Second additional variable

• paralog Number of co-orthologs in the current taxon

• abbrName e.g. "ncbi176299"

• taxonID Taxon ID, e.g. "176299"

• fullName Full taxon name, e.g. "Agrobacterium fabrum str. C58"

• supertaxonID Supertaxon ID (only different than ncbiID in case working with higher taxonomy rank than input's)

• supertaxon Name of the corresponding supertaxon

• rank Rank of the supertaxon

PhyloProfile documentation built on March 27, 2021, 6:01 p.m.