reduceProfile: Reduce the filtered profile data into supertaxon level

In PhyloProfile: PhyloProfile

Description

Reduce data of the processed phylogenetic profiles from input taxonomy rank into supertaxon level (e.g. from species to phylum)

Usage

reduceProfile(filteredProfile)

Arguments

filteredProfile

dataframe contains the filtered profiles (see ?parseInfoProfile, ?filterProfileData and ?filteredProfile)

Value

A reduced dataframe contains only profile data for the selected supertaxon rank. This dataframe contains only supertaxa and their value (mVar1 & mVar2) for each gene.

Author(s)

Vinh Tran [e-mail]

See Also

parseInfoProfile for creating a full processed profile dataframe, filterProfileData for filter processed profile and filteredProfile for a demo filtered profile dataframe

Examples

data("filteredProfile", package="PhyloProfile")
reduceProfile(filteredProfile)

PhyloProfile documentation built on March 27, 2021, 6:01 p.m.