Get information from individual slots in an AVS object.

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Description

Get information from individual slots in an AVS object.

Usage

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avs.get(object, what="summary", report=FALSE, pValueCutoff=NULL)

Arguments

object

an object of class 'AVS' AVS-class.

what

a single character value specifying which information should be retrieved from the slots. Options: 'markers', 'validatedMarkers', 'variantSet', 'randomSet', 'linkedMarkers', 'randomMarkers', 'vse', 'evse', 'summary' and 'status'.

report

a single logical value indicating whether to return results from 'vse', 'evse' as a consolidated table (if TRUE), or as they are (if FALSE).

pValueCutoff

an optional single numeric value specifying the cutoff to retrive results for p-values considered significant.

Value

get the slot content from an object of class 'AVS' AVS-class.

Author(s)

Mauro Castro

Examples

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## Not run: 
#This example requires the RTNdata package! (currently available under request)
library(RTNdata.LDHapMap.rel27)
data(bcarisk)
avs <- new("AVS", markers=bcarisk)
avs <- avs.preprocess(avs, nrand=100)
avs.get(avs)

## End(Not run)

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