avs.plot1: Plot results from AVS methods, single plots.

In RTN: RTN: Reconstruction of Transcriptional regulatory Networks and analysis of regulons

Description

This function takes an AVS object and plots results from the VSE and EVSE methods.

Usage

avs.plot1(object, what="vse", fname=what, ylab="genomic annotation", 
xlab="Number of clusters mapping to genomic annotation", breaks="Sturges", 
maxy=200, pValueCutoff=1e-2, width=8, height=3)

Arguments

object	an object of class 'AVS' AVS-class.
what	a character value specifying which analysis should be used. Options: "vse" and "evse".
fname	a character value specifying the name of output file.
ylab	a character value specifying the y-axis label.
xlab	a character value specifying the x-axis label.
breaks	breaks in the histogram, see hist function.
maxy	a numeric value specifying the max y-limit.
pValueCutoff	a numeric value specifying the cutoff for p-values considered significant.
width	a numeric value specifying the width of the graphics region in inches.
height	a numeric value specifying the height of the graphics region in inches.

Value

A plot showing results from the VSE and EVSE methods.

Author(s)

Mauro Castro

Examples

# see 'avs.vse' and 'avs.evse' methods.

RTN documentation built on Nov. 12, 2020, 2:02 a.m.