avs.plot2: Plot results from AVS methods, multiple plots.

In RTN: RTN: Reconstruction of Transcriptional regulatory Networks and analysis of regulons

Description

This function takes an AVS object and plots results from the VSE and EVSE methods.

Usage

avs.plot2(object, what="evse", fname=what, width=14, height=2.5, rmargin=1, 
bxseq=seq(-4,8,2), decreasing=TRUE, ylab="Annotation", 
xlab="Clusters of risk-associated and linked SNPs", tfs=NULL)

Arguments

object	an object of class 'AVS' AVS-class.
what	a single character value specifying which analysis should be used. Options: "vse" and "evse".
fname	a character value specifying the name of output file.
height	a numeric value specifying the height of the graphics region in inches.
width	a numeric value specifying the width of the graphics region in inches.
rmargin	a numeric value specifying the right margin size in inches.
bxseq	a numeric vector specifying which x-axis tickpoints are to be drawn.
decreasing	a logical value, used to sort by EVSE scores.
ylab	a character value specifying the y-axis label.
xlab	a character value specifying the x-axis label (on the top of the grid image).
tfs	an optional vector with annotation identifiers (e.g. transcription factor).

Value

A plot showing results from the VSE and EVSE methods.

Author(s)

Mauro Castro

Examples

# see 'avs.vse' and 'avs.evse' methods.

RTN documentation built on Nov. 12, 2020, 2:02 a.m.