tni.preprocess: A preprocessing function for objects of class TNI.

In RTN: RTN: Reconstruction of Transcriptional regulatory Networks and analysis of regulons

Description

This is a generic function, provides all preprocessing methods for the 'tni.constructor' function.

Usage

tni.preprocess(object, rowAnnotation=NULL, colAnnotation=NULL, cvfilter=FALSE, 
    verbose=TRUE)

Arguments

object	this argument is an object of class TNI-class.
rowAnnotation	an optional data frame with gene annotation.
colAnnotation	an optional data frame with sample annotation.
cvfilter	a single logical value specifying to remove duplicated genes in the gene expression matrix using the gene annotation.
verbose	a single logical value specifying to display detailed messages (when verbose=TRUE) or not (when verbose=FALSE).

Value

A pre-processed TNI-class object.

Author(s)

Mauro Castro

See Also

tni.constructor

Examples

## see 'tni.constructor'!

RTN documentation built on Nov. 12, 2020, 2:02 a.m.