tni.replace.samples: Entry point to assess new samples with previously calculated...

In RTN: RTN: Reconstruction of Transcriptional regulatory Networks and analysis of regulons

Description

This function replaces samples of an existing TNI-class objects.

Usage

tni.replace.samples(object, expData, rowAnnotation=NULL, colAnnotation=NULL, 
removeRegNotAnnotated=TRUE, verbose=TRUE)

Arguments

object	an object of class TNI-class.
expData	a gene expression matrix or 'SummarizedExperiment' object.
rowAnnotation	an optional data frame with gene annotation. Column 1 must provide all ids listed in the gene expression matrix.
colAnnotation	an optional data frame with sample annotation.
removeRegNotAnnotated	a single logical value specifying to remove 'regulatoryElements' not annotated in 'expData' (when removeRegNotAnnotated=TRUE) or not (when removeRegNotAnnotated=FALSE).
verbose	a single logical value specifying to display detailed messages (when verbose=TRUE) or not (when verbose=FALSE).

Value

A TNI-class object.

Author(s)

Mauro Castro

Examples

## please the package's vignette

RTN documentation built on Nov. 12, 2020, 2:02 a.m.