rnb.export.all.annotation: rnb.export.all.annotation

In RnBeads: RnBeads

Description

Wrapper for exporting all annotation sets

Usage

rnb.export.all.annotation(
  out.dir,
  types = c("CpG", rnb.region.types(assembly)),
  assembly = "hg19",
  format = "bed"
)

Arguments

out.dir	The directory to write the files to
types	One-element character vector giving the name of the region annotation.
assembly	Genome assembly of interest. See rnb.get.assemblies for the list of supported genomes.
format	output format. currently only "bed" is supported.

Value

TRUE, invisibly.

Author(s)

Fabian Mueller

Examples

logger.start(fname=NA)
rnb.export.all.annotation(tempdir(),c("genes","promoters"))

RnBeads documentation built on March 3, 2021, 2 a.m.