Adds or replaces a region annotation table.
BED file defining regions (see Details). Alternatively, the value of this parameter can be
a table of genomic regions in the form of a
Optional; short description in the form of a non-empty
Genome assembly of interest. See
In case the parameter
regions specifies an existing BED file, regions are loaded from this file. The number of
columns defined must be at least 3. Columns after the sixth one, if present, are dropped. The columns are given the
The annotation tables in RnBeads focus on chromosomes
"chrY". Regions on other chromosomes are ignored. This function also recognizes the
convention of chromosome names such as
"1", adopted, for example, by Ensembl.
Apart from this, the region definition table is not examined in details by this function; therefore, regions located
on unsupported chromosomes or having invalid (e.g. negative) genomic coordinates are simply not mapped to any sites
TRUE if an existing annotation was replaced and
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