ScISI2html: A function that generates an html page for the GO and MIPs...

In ScISI: In Silico Interactome

Description

This function takes a vector or url's and a vector of the protein complex description names (known names of the protein complexes) and creates an html file that lets the user link to each of the protein complex description site based on the particular url.

Usage

ScISI2html(urlVect, linkName, filename, title,
othernames, table.head, table.center = TRUE, compSize=NULL)

Arguments

urlVect	A character vector containing the url for each speficied protein complex
linkName	A character vector containing a description name for each of the url's in urlVect that will be the anchor for the url
filename	The output file; an html file written to the home directory
title	The title given to the html file
othernames	Other titles that are needed; sub-titles
table.head	The title for the table
table.center	Logical; to center the table
compSize	A numeric vector of the complex sizes for the various protein complexes of GO and MIPS

Value

An html file written to the user's home directory. The file contains a page of links (given by the url's) where each link is anchored by a description name for each url.

Author(s)

Tony Chiang

Examples

#go = getGOInfo(wantAllComplexes = FALSE)
#goM = createGOMatrix(go)
#goDF = createGODataFrame(go, goM)
#goOb = createYeastDataObj(goDF)
#goNames = colnames(goM)
#url = vector(length = length(goNames))
#for(i in 1:length(goNames)){
#   url[i] = getURL(goOb, goNames[i])
#}
#ScISI2html(url, goNames, test, GO Complexes)

ScISI documentation built on Nov. 8, 2020, 5:48 p.m.