sumStats: A function to calculate some summary statistics between an...

In ScISI: In Silico Interactome

Description

This function takes in a named list of in silico interactomes (by its incidence matrix representation of the bi-partite graph). The function compares each interactome pairwise (with itself as well as with each other interactome) and generates some summary statistics: e.g. the number of redundant protein complexes, the number of protein sub-complexes one interactome may posses with respect to some other interactome (possibly itself), etc.

Usage

sumStats(imList, pathToSave = NULL)

Arguments

imList	A named list of in silic interactomes (incidence matrix)
pathToSave	A character vector of a path location to where the summary statistics will be saved

Value

redundantM	A symmetric matrix with the row and column names named by the interactome names. The shows the number of redundancies (i.e. the number of repeated protein complexes) within two interactomes
subM	A matrix with the row and column names named by the interactome names. Each entry details how many protein sub-complexes are found within the interactome indexed by the row with respect to the interactome indexed by the column

Author(s)

TC

Examples

#gavin <- getAPMSData("Gavin")
#krogan <- getAPMSData("Krogan")
#imList <- vector("list", length=2)
#imList[[1]] <- gavin
#imList[[2]] <- krogan
#names(imList) <- c("Gavin", "Krogan")

#sumStats(imList)

ScISI documentation built on Nov. 8, 2020, 5:48 p.m.