yeastData-class: Class "yeastData"

In ScISI: In Silico Interactome

Description

A class representing an interactome of yeast. The object is in the form of a dataframe with three generic methods. The methods take two arguments: the first is the instance of the class yeastData; the second is the name of a protein complex with respect as given by the bi-partite graph incidence matrix.

Objects from the Class

Objects can be created by calls of the form new("yeastData", reference = dataFrameISI).

Slots

reference

The yeastData slot is merely a data frame for some in silico interactome.

Methods

ID

signature(object = "yeastData", name = "character"): ...

Desc

signature(object = "yeastData", name = "character"): ...

getURL

signature(object = "yeastData", name = "character"): ...

Author(s)

Tony Chiang

Examples

#go = getGOInfo(wantAllComplexes = FALSE)
#goM = createGOMatrix(go)
#cNames = colnames(goM)
#goDF = createGODataFrame(go, goM)
#goOb = createYeastObj(goDF)
#ID(goOb, cNames[5])
#Desc(goOb, cNames[5])
#getUrl(goOb, cNames[5])

ScISI documentation built on Nov. 8, 2020, 5:48 p.m.