w_list_mouse: Wikipathways lists for mouse produced by the wikiList...

In TimiRGeN: Time sensitive microRNA-mRNA integration, analysis and network generation tool

Description

List of entrezIDs associated with each wikipathway made for mouse. This dataset will allow for functions to run faster during CMD check and vignette building. This is used instead of the wikiList function in several instances in TimiRGeN because the wikiList takes a lot of time to download data. For example in the vignette and in several function examples. To reproduce the output enter the following code. >MAE <- MultiAssayExperiment >MAE2 <- wikiList(MAE, stringSpecies = 'Mus musculus', stringSymbol = 'L')

Usage

data("w_list_mouse")

Format

List of every mouse wikipathway. Each wikipathway will have associated genes stored as entrezIDs.

Details

A Large list of each wikipathway and associated enterzgene IDs.

Source

https://www.wikipathways.org/index.php/Download_Pathways

References

Denise N Slenter et al. “WikiPathways: a multifaceted pathway database b ridging metabolomics to other omics research”. In: Nucleic acids research 46.D1 (2017), pp. D661–D667.

Examples

data(w_list_mouse) -> w_list_mouse

TimiRGeN documentation built on April 17, 2021, 6:03 p.m.