wikiList: wikiList
In TimiRGeN: Time sensitive microRNA-mRNA integration, analysis and network generation tool
Description
Usage
Arguments
Value
Description
Provides a list of wikipathways specific for a species, and each
gene found to be within each pathway. wikiList will download and process a
large amount of data from the wikipathways website so this may take some
time to complete.
Usage
1
wikiList(MAE, stringSpecies = '', stringSymbol = '')
Arguments
MAE
MultiAssayExperiment which will store the results from
wikiList. It is recommended to use the same MAE which stores output from the
dloadGmt function.
stringSpecies
Full species name to decide which wikipathways to
download. 'Homo sapiens' to download human pathways or 'Mus musculus'
to download mouse pathways.
stringSymbol
Type of gene ID to retrieve e.g. 'En' for ensemble gene
IDs or 'L' for entrezgene IDs.
Value
List of wikipathways and associated genes saved as as strings. Output
will be stored as metadata in the input MAE.
TimiRGeN documentation built on April 17, 2021, 6:03 p.m.
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Description Usage Arguments Value
Description
Provides a list of wikipathways specific for a species, and each gene found to be within each pathway. wikiList will download and process a large amount of data from the wikipathways website so this may take some time to complete.
Usage
1 | wikiList(MAE, stringSpecies = '', stringSymbol = '')
|
Arguments
MAE |
MultiAssayExperiment which will store the results from wikiList. It is recommended to use the same MAE which stores output from the dloadGmt function. |
stringSpecies |
Full species name to decide which wikipathways to download. 'Homo sapiens' to download human pathways or 'Mus musculus' to download mouse pathways. |
stringSymbol |
Type of gene ID to retrieve e.g. 'En' for ensemble gene IDs or 'L' for entrezgene IDs. |
Value
List of wikipathways and associated genes saved as as strings. Output will be stored as metadata in the input MAE.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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