upperGroups: Detect uppercases as ranges object.
In amplican: Automated analysis of CRISPR experiments

For a given string, detect how many groups of uppercases is inside, where are they, and how long they are.

1	upperGroups(candidate)

candidate

(string) A string with the nucleotide sequence.

For example: asdkfaAGASDGAsjaeuradAFDSfasfjaeiorAuaoeurasjfasdhfashTTSfajeiasjsf

Has 4 groups of uppercases of length 7, 4, 1 and 3.

(IRanges) A IRanges object with uppercases groups for given candidate string

amplican documentation built on Nov. 8, 2020, 11:10 p.m.

amplican index

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

Description