API for cellHTS2
Analysis of cell-based screens - revised version of cellHTS
| Global functions | |
|---|---|
| .onAttach | Source code |
| .onLoad | Source code |
| Bscore | Man page Source code |
| Data | Man page |
| Data,cellHTS-method | Man page |
| Data<- | Man page |
| Data<-,cellHTS,array-method | Man page |
| KcViab | Man page |
| KcViabSmall | Man page |
| NPI | Source code |
| OPI | Source code |
| OPIScore | Source code |
| POC | Source code |
| QMbyPlate | Source code |
| QMexperiment | Source code |
| ROC | Man page |
| ROC,cellHTS-method | Man page |
| ROC-class | Man page |
| addTooltip | Source code |
| adjustVariance | Source code |
| adjustVariancebyBatch | Source code |
| adjustVariancebyExperiment | Source code |
| adjustVariancebyPlate | Source code |
| annotate | Man page |
| annotate,cellHTS-method | Man page |
| barplotWithImageMap | Source code |
| batch | Man page |
| batch,cellHTS-method | Man page |
| batch<- | Man page |
| batch<-,cellHTS,data.frame-method | Man page |
| bdgpbiomart | Man page |
| boxplotwithNA | Source code |
| buildCellHTS2 | Man page Source code |
| cellHTS | Man page |
| cellHTS-class | Man page |
| cellHTS2 | Man page |
| cellHTS2-package | Man page |
| cellHTSlistVerification | Source code |
| chanCorrFun | Source code |
| checkClass | Source code |
| checkColumns | Source code |
| checkControls | Source code |
| checkControls2W | Source code |
| checkMandatoryColumns | Source code |
| checkPosControls | Source code |
| chtsGetSetting | Source code |
| chtsImage | Source code |
| chtsImageStack | Source code |
| chtsModule | Source code |
| chtsSetSetting | Source code |
| class.cellHTS | Man page |
| coerce,chtsImage,data.frame-method | Man page |
| colors4Controls | Source code |
| compare2cellHTS | Man page |
| compare2cellHTS,cellHTS,cellHTS-method | Man page |
| configurationAsScreenPlot | Man page Source code |
| configure | Man page |
| configure,cellHTS-method | Man page |
| controlsBasedNormalization | Source code |
| controlsplot | Source code |
| convertOldCellHTS | Man page Source code |
| convertWellCoordinates | Man page Source code |
| corrFun | Source code |
| createOutputFolder | Source code |
| createProgressList | Source code |
| ctrlsPerPlate | Source code |
| dataframeOutput | Source code |
| densityplot | Source code |
| dualCh | Man page |
| dynRange | Source code |
| emptyOrNA | Source code |
| envisionPlateReader | Source code |
| equalOrZero | Source code |
| evalGseaModule | Source code |
| extractTag | Source code |
| findControls | Source code |
| funOperator | Source code |
| geneAnno | Man page |
| geneAnno,cellHTS-method | Man page |
| getArrayCorrectWellAnno | Source code |
| getConfiguration | Source code |
| getControlsPositions | Source code |
| getDefinition | Source code |
| getDynamicRange | Man page Source code |
| getEnVisionCrosstalkCorrectedData | Man page Source code |
| getEnVisionRawData | Man page Source code |
| getMeasureRepAgreement | Man page Source code |
| getNrPlateColRow | Source code |
| getPlist | Source code |
| getProInfo | Source code |
| getScreendesc | Source code |
| getScreenlog | Source code |
| getSettings | Man page Source code |
| getTopTable | Man page Source code |
| getZfactor | Man page Source code |
| gseaModule | Man page Source code |
| guid | Source code |
| handleOneGroup | Source code |
| histFun | Source code |
| imageScreen | Man page |
| imageScreenArgsVerification | Source code |
| initialize,cellHTS-method | Man page |
| intensFun | Source code |
| intensityFiles | Man page |
| intensityFiles,cellHTS-method | Man page |
| isUpToDate | Source code |
| length,GeneSet-method | Man page |
| lines,ROC-method | Man page Man page |
| maFun | Source code |
| makePlot | Source code |
| meanSdPlot | Man page |
| meanSdPlot,cellHTS-method | Man page |
| myCall | Source code |
| myImageMap | Source code |
| myUpdateProgress | Source code |
| name | Man page |
| name,cellHTS-method | Man page |
| name<- | Man page |
| name<-,cellHTS,character-method | Man page |
| nbatch | Man page |
| nbatch,cellHTS-method | Man page |
| normalizePlates | Man page Source code |
| oldKcViabSmall | Man page |
| oneRowPerId | Man page Source code |
| optimalDevDims | Source code |
| parseGlossaryXML | Source code |
| parseLetNum | Source code |
| pdim | Man page |
| pdim,cellHTS-method | Man page Man page |
| perCatPage | Source code |
| perPlateScaling | Source code |
| plate | Man page |
| plate,cellHTS-method | Man page |
| plateConf | Man page |
| plateConf,cellHTS-method | Man page |
| plateEffects | Man page |
| plateEffects,cellHTS-method | Man page |
| plateList | Man page |
| plateList,cellHTS-method | Man page |
| plateListClass | Source code |
| plot,ROC,missing-method | Man page Man page |
| plot,ROC-method | Man page Man page |
| plotPlateArgsVerification | Source code |
| plotSpatialEffects | Man page Source code |
| position | Man page |
| position,cellHTS-method | Man page |
| readHTAnalystData | Man page Source code |
| readHTAnalystOneReplicate | Source code |
| readPlateList | Man page Source code |
| rsa | Man page Source code |
| saveHtmlGlossary | Source code |
| scoreReplicates | Man page Source code |
| scoreReplicatesByNPI | Source code |
| scoreReplicatesByzscore | Source code |
| scores2calls | Man page Source code |
| screenDesc | Man page |
| screenDesc,cellHTS-method | Man page |
| screenImageMap | Source code |
| screenLog | Man page |
| screenLog,cellHTS-method | Man page |
| sdFun | Source code |
| setDefinition | Source code |
| setSettings | Man page Source code |
| settings | Man page |
| show,ROC-method | Man page |
| show,cellHTS-method | Man page |
| spatialNormalization | Man page Source code |
| standardizeWellID | Source code |
| state | Man page |
| state,cellHTS-method | Man page |
| summarizeChannels | Man page Source code |
| summarizeReplicates | Man page Source code |
| tableOutput | Source code |
| tableOutputWithHeaderRows | Source code |
| templateDescriptionFile | Man page Source code |
| updateCellHTS | Man page Source code |
| validityCellHTS | Source code |
| validityROC | Source code |
| well | Man page |
| well,cellHTS-method | Man page |
| wellAnno | Man page |
| wellAnno,cellHTS-method | Man page |
| write.tabdel | Man page Source code |
| writeHtml.experimentQC | Source code |
| writeHtml.gseaModule | Source code |
| writeHtml.header | Source code |
| writeHtml.mainpage | Source code |
| writeHtml.plateConf | Source code |
| writeHtml.plateList | Source code |
| writeHtml.screenDescription | Source code |
| writeHtml.screenResults | Source code |
| writeHtml.screenScript | Source code |
| writeHtml.screenSummary | Source code |
| writeHtml.tab | Source code |
| writeHtml.tabCollection | Source code |
| writeHtml.trailer | Source code |
| writeImgRef | Source code |
| writeIntensityFiles | Source code |
| writeQCTable | Source code |
| writeReport | Man page Source code |
| writeTab | Man page |
| writeTab,cellHTS-method | Man page |
| zfacFun | Source code |
