clustifyr: Classifier for Single-cell RNA-seq Using Cell Clusters

Package designed to aid in classifying cells from single-cell RNA sequencing data using external reference data (e.g., bulk RNA-seq, scRNA-seq, microarray, gene lists). A variety of correlation based methods and gene list enrichment methods are provided to assist cell type assignment.

Package overview README.md Improving NCBI GEO submissions of scRNA-seq data Introduction to clustifyr

Vignettes Man pages API and functions Files

Package details
Author	Rui Fu [aut, cre], Kent Riemondy [aut], Austin Gillen [ctb], Chengzhe Tian [ctb], Jay Hesselberth [ctb], Yue Hao [ctb], Michelle Daya [ctb], Sidhant Puntambekar [ctb]
Bioconductor views	Annotation Microarray Sequencing SingleCell
Maintainer	Rui Fu <raysinensis@gmail.com>
License	MIT + file LICENSE
Version	1.2.0
URL	http://github.com/rnabioco/clustifyr#readme https://rnabioco.github.io/clustifyr/
Package repository	View on Bioconductor
Installation	Install the latest version of this package by entering the following in R: `if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("clustifyr")`