file_marker_parse: takes files with positive and negative markers, as described...

In clustifyr: Classifier for Single-cell RNA-seq Using Cell Clusters

Description

takes files with positive and negative markers, as described in garnett, and returns list of markers

Usage

file_marker_parse(filename)

Arguments

filename

txt file to load

Value

list of positive and negative gene markers

Examples

marker_file <- system.file(
    "extdata",
    "hsPBMC_markers.txt",
    package = "clustifyr"
)

file_marker_parse(marker_file)

clustifyr documentation built on Nov. 8, 2020, 5:32 p.m.